WebSep 9, 2024 · If it's used in the pipeline, it comes in the pipeline container (s) (or conda environment or whatever packaging system you use). So you should never have to touch docker://fred2/optitype. When you run the pipeline with the -profile singularity argument, it will automatically pull the image from Docker Hub and convert to Singularity for you ... Weblinux-64 v1.3.2; conda install To install this package run one of the following: conda install -c compbiocore optitype conda install -c "compbiocore/label/gcc-4.8.5 ...

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WebPrecision HLA typing from next-generation sequencing data. Conda Files; Labels; Badges; Error WebList of packages to install or update in the conda environment. options --revision. Revert to the specified REVISION.--file. Read package versions from the given file. Repeated file specifications can be passed (e.g. --file=file1 --file=file2).--dev. Use sys.executable -m conda in wrapper scripts instead of CONDA_EXE. This is mainly for use ... free autoresponder 2019

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WebNow that you know the channel name, use the conda install command to install the package. In your terminal window or an Anaconda Prompt, run: conda install-c pandas bottleneck. This command tells conda to install the bottleneck package from the pandas channel on Anaconda.org. WebSep 9, 2024 · $ conda install -c bioconda optitype ensembl-vep sambamba bedtools picard bwa yara razers3 pyfaidx pyvcf $ conda install -c conda-forge coincbc $ conda install -c anaconda hdf5. Install VEP annotations and plugins Install VEP annotations using the following command. WebConda is the package manager that the Anaconda distribution is built upon. It is a package manager that is both cross-platform and language agnostic (it can play a similar role to a pip and virtualenv combination). Miniconda allows you to create a minimal self contained Python installation, and then use the Conda command to install additional ... bloated hard stomach